Basic Information
VIS ID
TVIS10007382
Fusion event
HBV-chr1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
1249
Orient
-
Integrated sequence
CCGTTGCCCGGCAACGGCCAGGTCTGTGCCAAGTGTTTGCTGACGCAACCCCCACTGGCTGGGGCTTGGTCATGGGCCATCAGCGCATGCGTGGAACCTT| |TTCGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTC
Host Sequence
Chromosome
chr1
Cytoband
q42.2
Reference genome
GRCh37/hg19
Start
231040448/230904702 (Hg38)
End
231040448/230904702 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1H
Nearest miRNA
hsa-mir-101-1/Upstream/2442550; hsa-mir-1182/Downstream/115126;
Nearest TSS
ENST00000473358/Upstream/29856; ENST00000497753/Downstream/16804;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/35793, chr1-CpG: 73/Downstream/73423
Nearby gene
C1orf198(-35113) ; TTC13(+1539) ;
Upstream sequence
TCCACAGGAGCAATTTTATCGATAGAACtgtgataccgaggtaataagaaagctatatctgatctctgccctccagttcctggcacagagctcgtaaaac
Downstream sequence
tcttggtattttctgagtgatcgggatgagaagtgttttttgttattaataagcaccttccaaccatatctgaatttatgctgatgagatgactcttgga
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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