Basic Information
VIS ID
TVIS10007392
Fusion event
HBV-chr17 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
1130
Orient
+
Integrated sequence
TACACAATGTGGTTATCCTGCGTTGATGCCTTTGTATGCATGTATTCAATCTAAGCAGGCTTTCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGTAAA| |CAATACCTGAACCTTTACCCCGTTGCCCGGCAACGGCCAGGTCTGTGCCAAGTGTTTGCTGACGCAACCCCCACTGGCTGGGGCTTGGTCATGGGCCATC
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
20606114/20702801 (Hg38)
End
20606114/20702801 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1180/Upstream/1358227; hsa-mir-10226/Downstream/6591109;
Nearest TSS
ENST00000595228/Upstream/69567; ENST00000578585/Downstream/85270;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/113419, chr17-CpG: 43/Downstream/81455
Nearby gene
CDRT15L2(-121890) ; CCDC144NL(+160594) ;
Upstream sequence
tttgtggatggatggtagtgataattgtataacagcatgaatgttcttaatacctctgaactgtatacctaaaactggttaatatggtacattttatatt
Downstream sequence
atgtgtgttttaccacaattaatttttttttttaaatggggtctaactctgtcatccaggccagagtgtagtggtgtgatctcagttcaccacaacctcc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate