Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10007397
Fusion event
HBV-RPL23AP82 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
Polymerase|
Start
1251
Orient
+
Integrated sequence
GTTGCCCGGCAACGGCCAGGTCTGTGCCAAGTGTTTGCTGACGCAACCCCCACTGGCTGGGGCTTGGTCATGGGCCATCAGCGCATGCGTGGAACCTTTT| |CGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTCCT
Host Sequence
Chromosome
chr22
Cytoband
q13.33
Reference genome
Start
End
51238258/50799830 (Hg38)
Orient
+
Location type
downstream
Target gene
Nearest miRNA
hsa-let-7a-3/Upstream/392306;
Nearest TSS
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/15941, None/Downstream
Upstream sequence
TGAATCAGGCATAAATATTCtgatggttaattttagacatctacttgactggattaagagacacacatagctggtcaaacatgatttctgACATGAATCA
Downstream sequence
GGCATAAATATTCtgacggttaattttagacatctacttgactggattaagagacacacatagctggtcaaacatgatttcAGCCATGAATCAGCCATAA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.