Basic Information
VIS ID
TVIS10007451
Fusion event
HBV-chr16 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|Polymerase|
Start
1387
Orient
-
Integrated sequence
CCGCTTGTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATCGTTTCCATGGCTGCTAGG| |CTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCT
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
33902268/34099801 (Hg38)
End
33902268/34099801 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/3205816; hsa-mir-11401/Downstream/63777;
Nearest TSS
ENST00000527434/Upstream/123455; ENST00000319817/Downstream/60235;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/48558, chr16-CpG: 20/Downstream/34132
Nearby gene
RNU6-76P(-339025) ; LINC00273(+58784) ;
Upstream sequence
tcactccactcccctcttctccattccattccatcccaatccattccactcctttccactccactccatcccattccactccactccatgccactccgct
Downstream sequence
ccactccactccactccattccattccattccattccattccactccaatccacacacatcacaaagttgtttctcagaatgcttctgtttagtttttat
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate