Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene4923020348986247490620814909948449099673490928644909301349108225
Basic Information
VIS ID
TVIS10007475
Fusion event
HBV-chr4 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
1248
Orient
-
Integrated sequence
CCCGTTGCCCGGCAACGGCCAGGTCTGTGCCAAGTGTTTGCTGACGCAACCCCCACTGGCTGGGGCTTGGTCATGGGCCATCAGCGCATGCGTGGAACCT| |TTTCGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGT
Host Sequence
Chromosome
chr4
Cytoband
p11
Reference genome
GRCh37/hg19
Start
49110242/49108225 (Hg38)
End
49110242/49108225 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1455482; hsa-mir-1243/Downstream/3604457;
Nearest TSS
ENST00000502981/Upstream/79533; ENST00000504661/Downstream/2734775;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/121434, chr4-CpG: 24/Downstream/53215
Nearby gene
CWH43(-46147) ;
Upstream sequence
tggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttggtcatgaa
Downstream sequence
ccattccattccactccattccattccattccattccattccattccattccattccattccaatccattccattccactccactccggttgattccatt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate