Basic Information
VIS ID
TVIS10007514
Fusion event
HBV-chr1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
2275
Orient
-
Integrated sequence
AATATGGGCCTAAAGTTCAGGCAACTCTTGTGGTTTCACATTTCTTGTCTCACTTTTGGAAGAGAAACAGTTATAGAGTATTTGGTGTCTTTCGGAGTGT| |GGATTCGCACTCCTCCAGCTTATAGACCACCAAATGCCCCTATCCTATCAACACTTCCGGAGACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAG
Host Sequence
Chromosome
chr1
Cytoband
p36.12
Reference genome
GRCh37/hg19
Start
21116030/20789537 (Hg38)
End
21116030/20789537 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/155749; hsa-mir-101-1/Downstream/198777;
Nearest TSS
ENST00000473358/Upstream/2214; ENST00000416959/Downstream/58408;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1909, chr1-CpG: 77/Downstream/387085
Nearby gene
HP1BP3(-2849) ; EIF4G3(+16755) ;
Upstream sequence
tgtaatcccagcactttgggaggcctaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtccctactaaaaatacaaaaattagccgg
Downstream sequence
gcgtgtggcacgtgcctgcaatcccagctattcgagaggctgagggcaggagaaccccttgaacccaggaggcggaggctgcagcgagccaagattgcac
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate