Basic Information
VIS ID
TVIS10007539
Fusion event
HBV-chr11 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
1959
Orient
+
Integrated sequence
TACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTG| |CCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTCACCTCACCATA
Host Sequence
Chromosome
chr11
Cytoband
q11
Reference genome
GRCh37/hg19
Start
54966696/55199220 (Hg38)
End
54966696/55199220 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-129-2/Upstream/7102362; hsa-let-7a-2/Downstream/1544653;
Nearest TSS
ENST00000527297/Upstream/492388; ENST00000417545/Downstream/62962;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/4900619, chr11-CpG: 94/Downstream/673372
Nearby gene
TRIM48(+62962) ;
Upstream sequence
cataggcgtgggcaaggacttcatgtccaaaacaccaaaagcaatgacaacaaaagccaaaattgacaaatgggatctaattaaactaaagagcttctgc
Downstream sequence
acagcaaaagaaactaccatcagagtgaacaggcaacctacaacatgggagaaaattttcgcaacctactgatctgacaaagggctaatatccagaatct
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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