Basic Information
VIS ID
TVIS10007587
Fusion event
HBV-chr2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
693
Orient
+
Integrated sequence
TTGCACCTGTATTCCCATCCCATCATCCTGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTT| |GTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAGCATCTTGAGTCCCTTTT
Host Sequence
Chromosome
chr2
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
123285067/122527491 (Hg38)
End
123285067/122527491 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/8806123; hsa-mir-10b/Downstream/4896046;
Nearest TSS
ENST00000437798/Upstream/736999; ENST00000435441/Downstream/537830;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/771541, chr2-CpG: 79/Downstream/1497184
Nearby gene
TSN(-759639) ; CNTNAP5(+1497797) ;
Upstream sequence
TAACCTTCCATATAGTTTCTACTTGTGCAAATGAGATTGTTTTTAAAGCTATAAATCTGTCCTACTGCTTTAATGTCTGAATGGATTTGTGGGCCTGTAA
Downstream sequence
ACATTTAACGGAACACACATCTGGAATAATCAACTGGAACCACGAACTTCATATATTTACAAGAACAAGTGAAAGATGACCTTATTTTTATTCAACACCC
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate