VISDB Viral Integration Site DataBase

VIS ID

TVIS10007663

Fusion event

HBV-ATG10 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

precore/core protein|Core and e antigen|Polymerase|

Start

2326

Orient

-

Integrated sequence

ACTTTTGGAAGAGAAACAGTTATAGAGTATTTGGTGTCTTTCGGAGTGTGGATTCGCACTCCTCCAGCTTATAGACCACCAAATGCCCCTATCCTATCAA| |CACTTCCGGAGACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAG

Chromosome

chr5

Cytoband

q14.1

Reference genome

Start

End

81322736/82026917 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-9-5p ; hsa-mir-215-5p ; hsa-mir-181a-5p ; hsa-mir-192-5p ; hsa-mir-6794-3p ; hsa-mir-342-3p ; hsa-mir-4639-3p ; hsa-mir-216b-3p ; hsa-mir-3680-5p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-653-5p ; hsa-mir-4772-5p ; hsa-mir-383-5p ; hsa-mir-3919 ; hsa-mir-4756-3p ; hsa-mir-382-5p ; hsa-mir-7850-5p ; hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-3941 ; hsa-mir-130b-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-4789-3p

Nearest miRNA

hsa-mir-10397/Upstream/9148254; hsa-mir-103a-1/Downstream/813238;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/54369, chr5-CpG: 49/Downstream/251097

Upstream sequence

agagtcaattatgccatgcttttctaaatgaacagaaatattattaagtaaccttacatatcacacttcttgattgtttctatcccactgagcgactatc

Downstream sequence

gcatggtggtgggtacctgtaattccagctactcgagaggctgaggcaggagaatcgcttgaacccaggaggcggagtttgcagtgagccgagatcacac