Basic Information
VIS ID
TVIS10007673
Fusion event
HBV-LOC100506885 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
1958
Orient
+
Integrated sequence
CTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTT| |GCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTCACCTCACCAT
Host Sequence
Chromosome
chr6
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
19769985/19769754 (Hg38)
End
19769985/19769754 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC100506885
Nearest miRNA
hsa-mir-3691/Upstream/1197874; hsa-mir-10398/Downstream/7377872;
Nearest TSS
ENST00000381078/Upstream/16641; ENST00000378700/Downstream/34614;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/77680, chr6-CpG: 64/Downstream/34869
Nearby gene
MIR548A1(-1197874) ; ID4(+67616) ;
Upstream sequence
CAGTCCGGAGTTCGTACCCCACAGAACTCTTCGCAGGGAGTGTCTTACTCGCTACAGCCGGACCCTAAGCGCATCCGCCTTCCCAAGTTCATCTGACACA
Downstream sequence
aagatggattaaagatttaaacgttagacctaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggcgtgggcaaggacttc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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