VISDB Viral Integration Site DataBase

VIS ID

TVIS10007735

Fusion event

HBV-PRPF40B integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|

Start

965

Orient

-

Integrated sequence

CTCTCTAAATTTTATGGGTTATGTCATTGGATGTTATGGGTCCTTGCCACAAGAACACATCATACAAAAAATCAAAGAATGTTTTAGAAAACTTCCTATT| |AACAGGCCTATTGATTGGAAAGTATGTCAACGAATTGTGGGTCTTTTGGGTTTTGCTGCCCCTTTTACACAATGTGGTTATCCTGCGTTGATGCCTTTGT

Chromosome

chr12

Cytoband

q13.12

Reference genome

Start

End

50021632/49627849 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-335-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/855812; hsa-let-7i/Downstream/606293;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/4166, chr12-CpG: 116/Downstream/78810

Upstream sequence

tggagtggatgtggggaaaacagttgggaggccactgcaattagatgaaaaaagatggtggcttgggcaagatgggtggtggaaaaggaaatggagagaa

Downstream sequence

atggatagattcaagaaatcttgaggaggtaaagttaacaagacttggtgatttattggcaaggaagagggagttgtggagagtgactcataggtttcca