VISDB Viral Integration Site DataBase

VIS ID

TVIS10007755

Fusion event

HBV-NCOR1 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|

Start

2824

Orient

-

Integrated sequence

TCATTACTTCCAAACTAGACACTATTTACACACTCTATGGAAGGCGGGTATATTATATAAGAGAGAAACAACACATAGCGCCTCATTTTGTGGGTCACCA| |TATTCTTGGGAACAAGATCTACAGCATGGGGCAGAATCTTTCCACCAGCAATCCTCTGGGATTCTTTCCCGACCACCAGTTGGATCCAGCCTTCAGAGCA

Chromosome

chr17

Cytoband

p12

Reference genome

Start

End

15943040/16039726 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1301-3p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-320a ; hsa-let-7b-5p ; hsa-mir-34a-3p

Nearest miRNA

hsa-mir-1253/Upstream/788030; hsa-mir-10226/Downstream/242288;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/39352, chr17-CpG: 118/Downstream/175235

Upstream sequence

AAAGAATGGCCTCTAGAGCTAACTGAGCCTGAAAGAGAATCAAAAACATTTCCACTTATTTCTGAAAGGCCAATCAGGAAACAAACATGCATTGCCCCAT

Downstream sequence

CAGCCCACTGAATACACACAGCACTTGGCAAGTGACCTAGAACAATACCAGGACCCACCACACAGAGACCtttttttttggagacagagtctctctctgt