Basic Information
VIS ID
TVIS10007884
Fusion event
HBV-chr8 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
260
Orient
-
Integrated sequence
AGAACATCACATCAGGATTCCTAGGACCCCTTCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCGCAGAGTCTAGACTCGTG| |GTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAACT
Host Sequence
Chromosome
chr8
Cytoband
q24.13
Reference genome
GRCh37/hg19
Start
123092449/122080210 (Hg38)
End
123092449/122080210 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA8C ; FRA8E
Nearest miRNA
hsa-mir-12123/Upstream/2754945; hsa-mir-10400/Downstream/1135578;
Nearest TSS
ENST00000518652/Upstream/195486; ENST00000607393/Downstream/46974;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/440061, chr8-CpG: 223/Downstream/699920
Nearby gene
HAS2-AS1(-434885) ; ZHX2(+701452) ;
Nearest cancer related gene
ZHX2(TSG, +701452) ;
Upstream sequence
ttattattatttgtgtttgtttgttgatattatcttCTTGGAATGAAAATTCCAAACTAGAGAGAAGGGAATGCTACAAAATTTAAATTTTCCTCCCAGC
Downstream sequence
gcttagtgattttggggtccccagatttattttcctttcacatttggaagatccaatgatcttccaaatttaatacgtataatggacttggaacagaacc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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