Basic Information
VIS ID
TVIS10007894
Fusion event
HBV-chr1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
199
Orient
+
Integrated sequence
ACTACTGCCTCTCCCTTATCGTCAATCTTCTCGAGGATTGGGGACCCTGCGCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTTCTCGTGT| |TACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTG
Host Sequence
Chromosome
chr1
Cytoband
p36.12
Reference genome
GRCh37/hg19
Start
22442755/22116262 (Hg38)
End
22442755/22116262 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/1127830; hsa-mir-101-1/Downstream/149977;
Nearest TSS
ENST00000473358/Upstream/15649; ENST00000400239/Downstream/13589;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/62726, chr1-CpG: 35/Downstream/3765
Nearby gene
CDC42(-23319) ; WNT4(+1043) ;
Upstream sequence
tggcagtgctgggatccaaaccaggtctatctgatttcaaagcctgggacctttgcaTAGTGCTAGAAAATGGTTCAGCATGGTCACCTTGACTTCTTGG
Downstream sequence
TTTGGttttgttttgagacagggtcttgccctgttgcctaggctggagtgcagtgatgcagtctcagttcactgcaacttctgtccccaaggctcaagtg
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate