Basic Information
VIS ID
TVIS10007938
Fusion event
HBV-chr2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1651
Orient
-
Integrated sequence
CGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTC| |TTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGG
Host Sequence
Chromosome
chr2
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
70374428/70147296 (Hg38)
End
70374428/70147296 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S ; FRA2E
Nearest miRNA
hsa-mir-1301/Upstream/1043541; hsa-mir-10b/Downstream/105622;
Nearest TSS
ENST00000437798/Upstream/21979; ENST00000422380/Downstream/34699;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/4298, chr2-CpG: 54/Downstream/43318
Nearby gene
LINC01816(-21980) ; C2orf42(+2589) ;
Upstream sequence
TGTGGTTATTCCTTCTCTTTTAGAGGCATAGTACCTCTCTTACCAAAAATGTCTCCCCCTCTGTTAGGCCAATCAGTGCCTTTTTGGGGGCTGGGAGGGG
Downstream sequence
TTCTGCCTTTTGGATCAGAGAGTGGAGCAGTGAGTCCTGCTCCAGTGAGGAAGCCATACATTCAGGCACTTCAGGAGCCAGAATTCCTACTAGGGGAGCT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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