hsa-mir-6844 _LIHC.png
hsa-mir-4753-3p _LIHC.png
hsa-mir-1304-5p _LIHC.png
PDE3A _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10007991
Fusion event
HBV-PDE3A integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
Polymerase|large S protein|middle S protein|
Start
26
Orient
+
Integrated sequence
AATTCCACAACCTTCCACCAAACTCT| |GCAAGATCCCAGAGTGAGAGGCCTGTATTTCCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCTGTTCTGACTACTGCCTCTCCCTTATCGTCAATC
Host Sequence
Chromosome
chr12
Cytoband
p12.2
Reference genome
End
20691684/20538750 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1244-3/Upstream/2865356; hsa-let-7i/Downstream/3673671;
Upstream sequence
AGAGTGAAGAGCTAAAAATTCTTTACTACTTGTGTATTCAACAGTAGAATTTTAAAAATCAACTCcttattgtagcctaaaccacctgggttcaagcaat
Downstream sequence
cctcctgcctcagcctcccaaatagctgggactataggtgtgtgtcatcaggcctggctaatttctaaaattttttgtagacgtgagatcccactacatt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate