VISDB Viral Integration Site DataBase

VIS ID

TVIS10008023

Fusion event

HBV-RAB3GAP2 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|

Start

1784

Orient

-

Integrated sequence

TCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCT| |GTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGC

Chromosome

chr1

Cytoband

q41

Reference genome

Start

End

220337144/220163802 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-34a-5p ; hsa-let-7b-5p ; hsa-mir-374a-3p ; hsa-mir-4735-5p ; hsa-mir-135b-5p ; hsa-mir-135a-5p ; hsa-mir-889-5p ; hsa-mir-136-3p ; hsa-mir-323a-3p ; hsa-mir-4668-3p

Nearest miRNA

hsa-mir-101-1/Upstream/45561; hsa-mir-1182/Downstream/36736;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/69210, chr1-CpG: 37/Downstream/108336

Upstream sequence

GATATTTTCTAAATCAGTCAAGGTAAatatataaatacatacatatatatatatatatatatatatatataGGATGAAGGTAAGATCTAAGAGATGAATA

Downstream sequence

AGTAATTTTCAAGTTCTCTTCAAGTAAAATGGGATATTTTACAATTTCTGCAACTGGATTTCATGTCACCTGCAAGCATGTGATAGAGGTGAAAAATACA