Basic Information
VIS ID
TVIS10008040
Fusion event
HBV-chr16 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1828
Orient
+
Integrated sequence
AGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTC| |ACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATT
Host Sequence
Chromosome
chr16
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
86176011/86142405 (Hg38)
End
86176011/86142405 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12128/Upstream/223989; hsa-mir-11401/Downstream/1692187;
Nearest TSS
ENST00000527434/Upstream/52879; ENST00000601250/Downstream/16393;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/168324, chr16-CpG: 71/Downstream/144164
Nearby gene
IRF8(-219800) ; LINC02135(+144026) ;
Nearest cancer related gene
IRF8(TSG, -219800) ;
Upstream sequence
ggacacagagacacacacagagggaagacagccatgtgaaaacggaggcaagaattgcaaagacgcagctgcagcccaagaacaccaagggttgtaggct
Downstream sequence
gaaccaggagctggaagaggcaaggaagccttcttgagccttcagaaggagtgaggcactgctggcaccttgattttgaatttcgggactgcagaactgt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate