Basic Information
VIS ID
TVIS10008066
Fusion event
HBV-chr7 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|
Start
1842
Orient
+
Integrated sequence
TGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATC| |ATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGG
Host Sequence
Chromosome
chr7
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
13745070/13705445 (Hg38)
End
13745070/13705445 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-339/Upstream/6638400; hsa-mir-10399/Downstream/4421775;
Nearest TSS
ENST00000635602/Upstream/340396; ENST00000638774/Downstream/11770;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/1017822, chr7-CpG: 18/Downstream/284308
Nearby gene
ARL4A(-1014512) ; ETV1(+185786) ;
Nearest cancer related gene
ETV1(OG, +185786) ;
Upstream sequence
ATATAATTACTGTTTTAAAAGATTTCATGccaacctgggcaacatagcaagacctcatctctacaaaaaaaaaaaaaaatatatatatatatatataaat
Downstream sequence
TTTAAACATTATTAACTATATCTAGTTATATTTTTATATTATAGTTACTAAATATATGACTGAAGTATTAGTAATAAGATTTATACATTCTTTTGTGCCA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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