Basic Information
VIS ID
TVIS10008077
Fusion event
HBV-LOC105374510 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1782
Orient
-
Integrated sequence
TGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGG| |CTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGT
Host Sequence
Chromosome
chr4
Cytoband
p15.31
Reference genome
GRCh37/hg19
Start
18774216/18772593 (Hg38)
End
18774216/18772593 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
LOC105374510
Nearest miRNA
hsa-mir-12113/Upstream/5144636; hsa-mir-12115/Downstream/1755682;
Nearest TSS
ENST00000502981/Upstream/283085; ENST00000511431/Downstream/682843;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/749943, chr4-CpG: 284/Downstream/1479060
Nearby gene
LCORL(-750733) ; SLIT2(+1481019) ;
Upstream sequence
ttctggttaaagaagggtcaagaaaaatctttttcctttgagttgtttgggtgaagtatgtttttgtagcaaatttacctttctctctgagttctccaaa
Downstream sequence
cctctgtgagatactatacaagatggccatcccaagacacatactcatcacatttttcaaggtcaatacaaaatttaaaaaatcttaaagtcagctagag
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate