Basic Information
VIS ID
TVIS10008082
Fusion event
HBV-chr1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1818
Orient
-
Integrated sequence
GTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATG| |CAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTT
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
GRCh37/hg19
Start
247397017/247233715 (Hg38)
End
247397017/247233715 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1I
Nearest miRNA
hsa-mir-101-1/Upstream/31655; hsa-mir-3124/Downstream/1592662;
Nearest TSS
ENST00000473358/Upstream/45189; ENST00000474792/Downstream/8108;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/22713, chr1-CpG: 61/Downstream/66831
Nearby gene
MIR3916(-31655) ; VN1R5(+22357) ;
Upstream sequence
ttgtgattcaaaggataaatgcttgaggggatagatgccccattctctatgctgtgattatttcacattgcatgcctgtatcaaaccccatctcatgtac
Downstream sequence
ctcataaatatgtatacctactatgtacccacaaaaattaaaaCAAAAAGAAAGAAAAAGAAAAAGAAAAGTAAATGaaatagattacaaggcaaaagta
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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