Basic Information
VIS ID
TVIS10008091
Fusion event
HBV-chr10 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|Polymerase|
Start
2334
Orient
+
Integrated sequence
AAGAGAAACAGTTATAGAGTATTTGGTGTCTTTCGGAGTGTGGATTCGCACTCCTCCAGCTTATAGACCACCAAATGCCCCTATCCTATCAACACTTCCG| |GAGACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAAT
Host Sequence
Chromosome
chr10
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
74760495/73000737 (Hg38)
End
74760495/73000737 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/279637; hsa-mir-107/Downstream/2551721;
Nearest TSS
ENST00000439456/Upstream/45959; ENST00000431293/Downstream/16124;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/307898, chr10-CpG: 103/Downstream/95363
Nearby gene
PLA2G12B(-45985) ; P4HA1(+6485) ;
Upstream sequence
ttcacggtgcttcataatagggtggaaaagtagaaggggaaagaagtgtatataaaagagacaggacaaaggaggatgacccacttaacgacaacatgct
Downstream sequence
tttgcaagagtctcgactaacccagtctcatgggaaagacattaatccatcttaattatctcttaaggcccaggctcccagaaccattacattggcaatt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate