Basic Information
VIS ID
TVIS10008105
Fusion event
HBV-chr12 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1783
Orient
-
Integrated sequence
GTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGC| |TGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTG
Host Sequence
Chromosome
chr12
Cytoband
p13.32
Reference genome
GRCh37/hg19
Start
5187527/5078361 (Hg38)
End
5187527/5078361 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3649/Upstream/3417981; hsa-let-7i/Downstream/1885338;
Nearest TSS
ENST00000382841/Upstream/34372; ENST00000544842/Downstream/159911;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/33181, chr12-CpG: 25/Downstream/64748
Nearby gene
KCNA5(-31573) ; NTF3(+353753) ;
Upstream sequence
AGAGCCTCCCTGCCTGTCAAGATGTCGTGGGGAAAGAGCACTGCGGGAGACCCAAACATCAGGGTGGCATTTGTGCCTTTCTTGTAGTCAAGTGATCAGT
Downstream sequence
ATCACTTTTAGGTTCCCAGCTCCTTCCTCAGGGGCAGAATGCAATACTATGCACATTGCAGGTACCCAGTGTTTGTTGATGAGAGGAATGAATGAGCGAA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate