Basic Information
VIS ID
TVIS10008139
Fusion event
HBV-chr2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
2186
Orient
-
Integrated sequence
GGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCCAGCGTCTAGAGACCTAGTAGTCAGTTATGTCAACACTAATATGGGCCT| |AAAGTTCAGGCAACTCTTGTGGTTTCACATTTCTTGTCTCACTTTTGGAAGAGAAACAGTTATAGAGTATTTGGTGTCTTTCGGAGTGTGGATTCGCACT
Host Sequence
Chromosome
chr2
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
159021534/158165022 (Hg38)
End
159021534/158165022 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-128-1/Upstream/6796611; hsa-mir-10b/Downstream/1021813;
Nearest TSS
ENST00000437798/Upstream/38596; ENST00000412781/Downstream/1628;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/288189, chr2-CpG: 169/Downstream/291638
Nearby gene
UPP2(-28868) ; CCDC148-AS1(+1628) ;
Upstream sequence
gtcctggggaaaaaaggaaacataacaaacactaaaaattataattttacaaaattcctgaaataaaattgaatttatattgtgaaagggaatataattt
Downstream sequence
actaagtatattaacccagaatgacaaacacaaagtccagtaaaactgctatattataaaggaagtgaaaaaaactctaattaggcaaaaagatcaagtg
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate