VISDB Viral Integration Site DataBase

VIS ID

TVIS10008141

Fusion event

HBV-SAMD10 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|precore/core protein|

Start

1820

Orient

+

Integrated sequence

TTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCA| |ACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTAT

Chromosome

chr20

Cytoband

q13.33

Reference genome

Start

End

62606139/63974786 (Hg38)

Orient

+

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-125b-5p ; hsa-mir-124-3p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-4516 ; hsa-mir-5703 ; hsa-mir-4434 ; hsa-mir-6828-5p ; hsa-mir-4696 ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-6770-5p ; hsa-mir-7515 ; hsa-mir-6847-5p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-9500 ; hsa-mir-3154

Nearest miRNA

hsa-mir-1-1/Upstream/32060; hsa-mir-6813/Downstream/102169;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/676, chr20-CpG: 102/Downstream/3987

Upstream sequence

CACGCACAAGGCCCTTGTTCTTGAGGGCGAGGGGGGAAGACCATAAAAGCAAGATTTTCCCAAAGATAGGGCAGGGAGCACTGCTAAGCCTGGGCCCTGG

Downstream sequence

GCGCGGAGCCACCTGGACAGGGCTGGGGTTCTCGTTGTGCCACATTTTGTCTCTGGCGCTTGGTCAATCTGGTCCTTTCTCAGCTTTACTTCTCATGAAT