Basic Information
VIS ID
TVIS10008142
Fusion event
HBV-chr21 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1827
Orient
-
Integrated sequence
AAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTT| |CACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAAT
Host Sequence
Chromosome
chr21
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
10869336/10643119 (Hg38)
End
10869336/10643119 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10396a/Upstream/1655454; hsa-let-7c/Downstream/2763265;
Nearest TSS
ENST00000624081/Upstream/121544; ENST00000624445/Downstream/6716;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/15395, chr21-CpG: 39/Downstream/2966496
Nearby gene
TEKT4P2(-900743) ; TPTE(+37407) ;
Upstream sequence
ttcataaaataaacaactgatttctcaccaaattcatgaaggcaaaaactcattgaggtggcgtatcaaaagactgaaatacactgtcaatcaagaatta
Downstream sequence
tacactttcaaagaaaccttcaaaagtgaaggagaaattaaggtgaatataaagaaacaaacgctgatggagttcatggaacctagacagtccttatgag
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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