Basic Information
VIS ID
TVIS10008146
Fusion event
HBV-NPHP3-ACAD11 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1814
Orient
-
Integrated sequence
GACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCAC| |CATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGAC
Host Sequence
Chromosome
chr3
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
132428756/132709912 (Hg38)
End
132428756/132709912 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
NPHP3-ACAD11
Nearest miRNA
hsa-let-7g/Upstream/723981; hsa-mir-1224/Downstream/1657892;
Nearest TSS
ENST00000440867/Upstream/14756; ENST00000489343/Downstream/6901;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/49113, chr3-CpG: 57/Downstream/11957
Upstream sequence
caagaccagcctggctaacatggcgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtgtgggcgcctgtaatcccagctactcagggg
Downstream sequence
GTCTGTGGCCCATTAGAAGACCAAACAATGGGCTTGCTGTTCAGGCACACGTCCATATTTCAAGGCATTCCCTACAAAACTGACCCATGGGGCTCagata
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate