VISDB Viral Integration Site DataBase

VIS ID

TVIS10008174

Fusion event

HBV-ARL15 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

S protein|Polymerase|large S protein|middle S protein|

Start

741

Orient

-

Integrated sequence

ATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATA| |TGGATGATGTGGTATTGGGGGCCAAGTCTGTACAGCATCTTGAGTCCCTTTTTACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATTTAAACCC

Chromosome

chr5

Cytoband

q11.2

Reference genome

Start

End

53275722/53979892 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-let-7b-5p ; hsa-mir-744-5p ; hsa-mir-155-5p ; hsa-mir-142-3p ; hsa-mir-7-5p ; hsa-mir-222-5p ; hsa-mir-3177-5p ; hsa-mir-7110-3p ; hsa-mir-4797-3p ; hsa-mir-4264 ; hsa-mir-936 ; hsa-mir-648 ; hsa-mir-199b-3p ; hsa-mir-199a-3p ; hsa-mir-3129-5p ; hsa-mir-6873-3p ; hsa-mir-6817-3p

Nearest miRNA

hsa-mir-10397/Upstream/28293; hsa-mir-103a-1/Downstream/1190640;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/418852, chr5-CpG: 59/Downstream/330210

Upstream sequence

ccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaaccc

Downstream sequence

tggggtttcaccatgttggccaaactggtctcaaactcttggcctcaagtaatccacctgacttggcctcccaaagtgctgggattacaggcgtgagcca