Basic Information
VIS ID
TVIS10008175
Fusion event
HBV-chr6 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1761
Orient
-
Integrated sequence
GGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTT| |AAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTA
Host Sequence
Chromosome
chr6
Cytoband
q21
Reference genome
GRCh37/hg19
Start
111943067/111621864 (Hg38)
End
111943067/111621864 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA6F
Nearest miRNA
hsa-mir-10398/Upstream/4837644; hsa-mir-1202/Downstream/7447183;
Nearest TSS
ENST00000381078/Upstream/15586; ENST00000483439/Downstream/54680;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/137558, chr6-CpG: 116/Downstream/250768
Nearby gene
TRAF3IP2(-15590) ; FYN(+38468) ;
Nearest cancer related gene
FYN(OG, +38468) ;
Upstream sequence
TTTTTGGGTATCCCTAACACTGACATTTCCCagcatcatgagaccacagagctggaagggttcctagagatcatgtactcacccgcacatttcacagatg
Downstream sequence
gaagctctcaggtgctactgatgctgctggtctctggatcataatctgagtaacaaggGTCTAAAGCACAGGGCCTAAGGGTGGTACTCCTATTCTGAGG
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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