VISDB Viral Integration Site DataBase

VIS ID

TVIS10008179

Fusion event

HBV-KIAA0319 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|

Start

1807

Orient

-

Integrated sequence

CTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCA| |CCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGA

Chromosome

chr6

Cytoband

p22.3

Reference genome

Start

End

24605134/24604906 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-3152-5p ; hsa-mir-4482-3p ; hsa-mir-7159-3p ; hsa-mir-6836-3p ; hsa-mir-6749-3p ; hsa-mir-4268 ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-6796-3p ; hsa-mir-99b-3p ; hsa-mir-99a-3p

Nearest miRNA

hsa-mir-3691/Upstream/6033026; hsa-mir-10398/Downstream/2542720;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/109464, chr6-CpG: 62/Downstream/40797

Upstream sequence

TTGCTCTTCATGCTTTGAATTTACTGAGCTATTTTCCTGTGTGACTATCTATATGCAAAGAATGGCTTAACCTTCCTACTTCTAAAATAAATGCTGCTTG

Downstream sequence

cttggctcacagcaacctcttcctcccgggttcaagcgattctcctgcttcagtctcccaagtagctaggattacaggcgccaaccaccatgcccagcta