VISDB Viral Integration Site DataBase

VIS ID

TVIS10008186

Fusion event

HBV-DPP6 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

precore/core protein|Core and e antigen|

Start

2180

Orient

+

Integrated sequence

TTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCCAGCGTCTAGAGACCTAGTAGTCAGTTATGTCAACACTAATAT| |GGGCCTAAAGTTCAGGCAACTCTTGTGGTTTCACATTTCTTGTCTCACTTTTGGAAGAGAAACAGTTATAGAGTATTTGGTGTCTTTCGGAGTGTGGATT

Chromosome

chr7

Cytoband

q36.2

Reference genome

Start

End

154157312/154460227 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-4668-5p ; hsa-mir-3153 ; hsa-mir-513b-3p ; hsa-mir-1276 ; hsa-mir-497-3p ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-511-5p ; hsa-mir-6830-3p

Nearest miRNA

hsa-mir-10399/Upstream/3026588; hsa-mir-153-2/Downstream/3114109;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/155031, chr7-CpG: 22/Downstream/290122

Upstream sequence

acttttggagtggtttgttataaaataatagataattaaaataggagtcagctgtgtatagaggttaatgaagccatgagatggttaagacaatcaatat

Downstream sequence

cgccttggcctcccaaagtgctgggattataggcatgagccaccgtgcctggccTTATTCATGTACTTTTTAATATCATGCTGATATGTCAATGTCCACA