VISDB Viral Integration Site DataBase

VIS ID

TVIS10008192

Fusion event

HBV-SNTB1 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|

Start

1742

Orient

-

Integrated sequence

CCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGT| |TGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATC

Chromosome

chr8

Cytoband

q24.12

Reference genome

Start

End

121719317/120707077 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

FRA8C ; FRA8E

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-24-3p ; hsa-mir-5011-5p ; hsa-mir-218-5p ; hsa-mir-510-3p ; hsa-mir-3606-5p ; hsa-mir-1825 ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-8062 ; hsa-mir-1277-5p ; hsa-mir-5195-3p ; hsa-mir-145-5p ; hsa-mir-199b-5p ; hsa-mir-199a-5p

Nearest miRNA

hsa-mir-12123/Upstream/1381812; hsa-mir-10400/Downstream/2508711;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/261660, chr8-CpG: 121/Downstream/104098

Upstream sequence

AGATActcatcttagttcacaataatactgtgaagtcatttttaactagtcctgttttatggatgaggagacagaaactgaaagggagaatgctttgctg

Downstream sequence

TTGAAAGTGCTTTATAGCACCTCCTTGCACACAGCCTCATTGCATGCTTATTGTCACCCTCATCTGAAATATGCATAAGTTGCAGGGCCTTTTAGAATCT