Basic Information
VIS ID
TVIS10008196
Fusion event
HBV-chr8 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1819
Orient
+
Integrated sequence
TTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGC| |AACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTA
Host Sequence
Chromosome
chr8
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
42529365/42674222 (Hg38)
End
42529365/42674222 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/1013714; hsa-mir-10400/Downstream/221975;
Nearest TSS
ENST00000518652/Upstream/127794; ENST00000531610/Downstream/23154;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/132170, chr8-CpG: 63/Downstream/168504
Nearby gene
SMIM19(-121225) ; CHRNB3(+23197) ;
Upstream sequence
tccagtcttcttgagtgatatctctggatgtgggagtgaaccaaatgaatagcgcctgaagcgaacccctagcaaaccacagcagccctacagaggaggg
Downstream sequence
CTATGTAAGGGTGCCCCCTGGAGCATAAGTGGATGCACGTTTTACATTCCAGTTGAAATGGAATCTCTCAGCCTCTCATTTCCCACCTTCCCCAGTCACC
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate