Basic Information
VIS ID
TVIS10008236
Fusion event
HBV-chr2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
962
Orient
+
Integrated sequence
TTACTCTCTAAATTTTATGGGTTATGTCATTGGATGTTATGGGTCCTTGCCACAAGAACACATCATACAAAAAATCAAAGAATGTTTTAGAAAACTTCCT| |ATTAACAGGCCTATTGATTGGAAAGTATGTCAACGAATTGTGGGTCTTTTGGGTTTTGCTGCCCCTTTTACACAATGTGGTTATCCTGCGTTGATGCCTT
Host Sequence
Chromosome
chr2
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
134809457/134051886 (Hg38)
End
134809457/134051886 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/1618066; hsa-mir-10b/Downstream/75239;
Nearest TSS
ENST00000437798/Upstream/483423; ENST00000488365/Downstream/68097;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/41766, chr2-CpG: 176/Downstream/67950
Nearby gene
NCKAP5(-483426) ; MIR3679(+75239) ;
Upstream sequence
atgttctagagatttaacatagatccctttggggagcctttttttggcctagcacaGACActtcaggagttttatagagcacacctcaaaattgcccact
Downstream sequence
tgagggaaggaacaggcaagagttaatccaccagttcccaagccccattgttcaatgcttgccacatgggtgtttcccaccttgagctcccaggttggta
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate