hsa-mir-6820-3p _LIHC.png
hsa-mir-4753-3p _LIHC.png
USP37 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10008238
Fusion event
HBV-USP37 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
precore/core protein|Core and e antigen|
Start
1959
Orient
-
Integrated sequence
TACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTG| |CCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTCACCTCACCATA
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
End
219327981/218463258 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10b/Upstream/60536; hsa-mir-1244-1/Downstream/359832;
Upstream sequence
gctctcccccacaataaacacacacacacacacacacacacacacacacacacacacacacacacacacacactttctttatatgttcttctatgtgtga
Downstream sequence
atggtaattttaccattaaaaaaatgtaattaaaaAGATCTCCACACCTTGAAGACTTAACTCGGTAGCTCTTTTGAGGTCATCATCTTCTTTCTGTTCC
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate