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VISDB
Viral Integration Site DataBase
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TVIS10008238
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10008238
Fusion event
HBV-USP37 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
1959
Orient
-
Integrated sequence
TACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTG| |CCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTCACCTCACCATA
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
GRCh37/hg19
Start
219327981/218463258 (Hg38)
End
219327981/218463258 (Hg38)
Orient
+
Location type
Intronic
Target gene
USP37
miRNAs that regulate target gene
hsa-mir-19b-3p
;
hsa-mir-30c-5p
;
hsa-let-7e-5p
;
hsa-mir-4487
;
hsa-mir-8060
;
hsa-mir-302b-5p
;
hsa-mir-302d-5p
;
hsa-mir-6820-3p
;
hsa-mir-3164
;
hsa-mir-3118
;
hsa-mir-134-5p
;
hsa-mir-4501
;
hsa-mir-185-3p
;
hsa-mir-4709-3p
;
hsa-mir-3591-5p
;
hsa-mir-616-3p
;
hsa-mir-3119
;
hsa-mir-5580-5p
;
hsa-mir-215-3p
;
hsa-mir-4280
;
hsa-mir-142-3p
;
hsa-mir-6832-3p
;
hsa-mir-6809-3p
;
hsa-mir-6833-3p
;
hsa-mir-4768-5p
;
hsa-mir-4753-3p
;
hsa-mir-4775
;
hsa-mir-130b-5p
;
hsa-mir-5003-3p
;
hsa-mir-32-3p
;
hsa-mir-606
;
hsa-mir-6894-3p
;
hsa-mir-19a-3p
;
hsa-mir-4763-5p
;
hsa-mir-6828-5p
;
hsa-mir-891a-5p
;
hsa-mir-4772-3p
;
hsa-mir-4264
;
hsa-mir-1910-5p
;
hsa-mir-455-3p
;
hsa-mir-191-5p
;
hsa-mir-548av-3p
;
hsa-mir-30e-5p
;
hsa-mir-30d-5p
;
hsa-mir-30b-5p
;
hsa-mir-30a-5p
Nearest miRNA
hsa-mir-10b/Upstream/60536; hsa-mir-1244-1/Downstream/359832;
Nearest TSS
ENST00000437798/Upstream/30743;
ENST00000489687/Downstream/13700;
Nearest CpG islands
None/Target,
chr2-CpG: 135/Upstream/56512
,
chr2-CpG: 106/Downstream/104786
Upstream sequence
gctctcccccacaataaacacacacacacacacacacacacacacacacacacacacacacacacacacacactttctttatatgttcttctatgtgtga
Downstream sequence
atggtaattttaccattaaaaaaatgtaattaaaaAGATCTCCACACCTTGAAGACTTAACTCGGTAGCTCTTTTGAGGTCATCATCTTCTTTCTGTTCC
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Sample Information
×
Sample name
693P
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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