Basic Information
VIS ID
TVIS10008256
Fusion event
HBV-chr9 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
772
Orient
-
Integrated sequence
CTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGT| |ACAGCATCTTGAGTCCCTTTTTACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATTTAAACCCTAACAAAACAAAGAGATGGGGTTACTCTCTA
Host Sequence
Chromosome
chr9
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
773864/773864 (Hg38)
End
773864/773864 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1302-9/Upstream/743583; hsa-let-7a-1/Downstream/4076433;
Nearest TSS
ENST00000422679/Upstream/39116; ENST00000564322/Downstream/67826;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/66444, chr9-CpG: 16/Downstream/52718
Nearby gene
KANK1(-27758) ; DMRT1(+67826) ;
Nearest cancer related gene
KANK1(TSG, -27758) ;
Upstream sequence
ttttggaataggtgtggtgtggtgttgaaaaaaatgtgtattctgttgatttggggtggagagttctgtagatgtctattatgtctgcttggtgcagagc
Downstream sequence
AGGATTCAGAAGAAAAAAAAAAAAgcctgtaatcccagcattttgggaggctgaggcgggaaaatcacttgaagtcagaagttcgagaccaggctgccct
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate