Basic Information
VIS ID
TVIS10008267
Fusion event
HBV-chr1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|Polymerase|
Start
2389
Orient
-
Integrated sequence
CCAGCTTATAGACCACCAAATGCCCCTATCCTATCAACACTTCCGGAGACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGC| |CTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATTCCTTGGACTCATAAGGTGGGGAACTTTACTG
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
GRCh37/hg19
Start
249239891/248945692 (Hg38)
End
249239891/248945692 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1I
Nearest miRNA
hsa-mir-101-1/Upstream/119249;
Nearest TSS
ENST00000473358/Upstream/39320;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/38901, None/Downstream
Nearby gene
PGBD2(-26546) ;
Upstream sequence
ggttcgggttcgggttcggggttaggggttaggggttaggggtcagggtcaaggtcacggtcagcgtcaggggtcaacgtcggggtcaggggttacggtt
Downstream sequence
aggggtaggggtagggttagggttagggttagggttagggttagggttagggttagggtagggttagggttagggttagggttaggggttaggggttagg
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate