Basic Information
VIS ID
TVIS10008434
Fusion event
HBV-chrX integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
486
Orient
+
Integrated sequence
GCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATT| |CCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGG
Host Sequence
Chromosome
chrX
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
61685241/62465771 (Hg38)
End
61685241/62465771 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/7014189; hsa-mir-105-1/Downstream/1320231;
Nearest TSS
ENST00000429181/Upstream/4554951; ENST00000451979/Downstream/883875;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/4555284, chrX-CpG: 51/Downstream/885302
Nearby gene
SPIN4(+881866) ;
Upstream sequence
ctggtgagagctctctttctggtttgaaaatggtagtcttttcacagtatcctcatatggtggagagcagagaaagaggaaaacaacctctctcgtgtct
Downstream sequence
tgagaatgcttcagtttagtttttctgtggaaatattcccgtttccaaagaaatcttcaaagaggtccacgtatccacttacagattctacaaaaagaca
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate