Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10008490
Fusion event
HBV-TUBBP5 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
383
Orient
+
Integrated sequence
GGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTG| |TCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTA
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
End
141054293/138159841 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
Nearest miRNA
hsa-let-7a-1/Upstream/321325;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/9180, chr9-CpG: 62/Downstream/15102
Upstream sequence
AAAAAAAAAaggtgcccaccaccacgcccggctaattttttgtatttttagtagagacagggtttcaccgtgttagccaggatggtcttgatctcctcac
Downstream sequence
agggttagggttagggttagggttagggctagggttggggtcagtggttaggggtcatggttaagggttaagggttggggttgggggttagggttagggg
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.