Basic Information
VIS ID
TVIS10008497
Fusion event
HBV-chr10 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1752
Orient
-
Integrated sequence
TACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGA| |GATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTT
Host Sequence
Chromosome
chr10
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
118073312/116313800 (Hg38)
End
118073312/116313800 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Nearest miRNA
hsa-mir-107/Upstream/2139621; hsa-mir-202/Downstream/513688;
Nearest TSS
ENST00000439456/Upstream/40333; ENST00000463594/Downstream/10628;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/39082, chr10-CpG: 57/Downstream/295267
Nearby gene
GFRA1(-40186) ; CCDC172(+10628) ;
Upstream sequence
TTTCTAGTTATTAAAATGAACACTTAAATGTTCATTGTTTAGACCAAAAACTATTGTTCATGCCAACCCTTGCATACATTCATTTTCCTTTattcattca
Downstream sequence
tctgacacaaagtcattgggaaattgctgtttccctgatactgttctaggggctgggaatcagtggtgtgcccaagaccgcctcatgaagctaccatttg
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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