VISDB Viral Integration Site DataBase

VIS ID

TVIS10008554

Fusion event

HBV-PSMD1 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|

Start

2639

Orient

+

Integrated sequence

TCTTTTCCTAATATACATTTACACCAAGACATTATCAAAAAATGTGAACAGTTTGTAGGCCCACTCACAGTTAATGAGAAAAGAAGATTGCAATTGATTA| |TGCCTGCCAGGTTTTATCCAAAGGTTACCAAATATTTACCATTGGATAAGGGTATTAAACCTTATTATCCAGAACATCTAGTTAATCATTACTTCCAAAC

Chromosome

chr2

Cytoband

q37.1

Reference genome

Start

End

231969021/231104307 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-24-3p ; hsa-mir-1180-3p ; hsa-mir-423-3p ; hsa-mir-346 ; hsa-mir-331-3p ; hsa-mir-149-5p ; hsa-mir-744-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-8057 ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-4284 ; hsa-mir-6131 ; hsa-mir-3663-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3189-3p ; hsa-mir-212-5p

Nearest miRNA

hsa-mir-10b/Upstream/3632120; hsa-mir-1244-1/Downstream/258401;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/47049, chr2-CpG: 51/Downstream/94152

Upstream sequence

TTTTCTTCCATTTTTAATCTGATGGTGCTTTGCTCTCTAGTTAACAAAATTCATGTCTGCCCTTTTATTTCCTGTAGCTAACACAGGTTAAGTTCCCAGT

Downstream sequence

TTCAGCAGCAGATGTCTCCCGTGAGCTGCTTAGGTTTTGCTGAGTTTTCCACTACATAGTATAGTCAAATAAGTTATTTATGTGCTTGCTACTTCTAAGG