Basic Information
VIS ID
TVIS10008560
Fusion event
HBV-chr5 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|
Start
1846
Orient
-
Integrated sequence
GGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCT| |CTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTT
Host Sequence
Chromosome
chr5
Cytoband
q34
Reference genome
GRCh37/hg19
Start
160682938/161255931 (Hg38)
End
160682938/161255931 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/770481; hsa-mir-103a-1/Downstream/6909914;
Nearest TSS
ENST00000502646/Upstream/317305; ENST00000518888/Downstream/290712;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/833825, chr5-CpG: 68/Downstream/291755
Nearby gene
LINC02159(-317305) ; GABRB2(+32498) ;
Upstream sequence
CACCACAACACTTGAGTGGGGTGAGCTTCCTACCTCAGACCCAGATGTTTCTAAACAGAGTAAATTCTGAgctgggcatggtggctcacacctgtaatcc
Downstream sequence
GTGAAGTAGATGCACGAGAAAAAAATGACCTTAAAAAATTCTTCCCAGCTATTCCCTTCAATAATTTATTGTCGGTCCACTCCACATAAAGATCGAACGG
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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