Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10008583
Fusion event
HBV-ADCY10 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
Polymerase|
Start
2513
Orient
+
Integrated sequence
CGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATTCCTTGGACTCATAAGGTGGGGAACTTTACTGGGCTTTATTCTTCTACTGTACCTG| |TCTTTAATCCTCATTGGAAAACACCATCTTTTCCTAATATACATTTACACCAAGACATTATCAAAAAATGTGAACAGTTTGTAGGCCCACTCACAGTTAA
Host Sequence
Chromosome
chr1
Cytoband
q24.2
Reference genome
End
167854971/167885733 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-101-1/Upstream/1730935; hsa-mir-1182/Downstream/112927;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/65324, chr1-CpG: 89/Downstream/50056
Upstream sequence
tgagacggagtctcactctgtcacctgggctggagtgcagtggcacatctcatctcactgcaacctccgcctcctgggttcaagtgattctgttgcctca
Downstream sequence
gcccctgagtagctgggattacaggcgcccaccactacgcccagctaattttttgtatttttagtagagacggggtttcaccatgttggccaggctggtc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.