Basic Information
VIS ID
TVIS10008592
Fusion event
HBV-chr14 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
421
Orient
+
Integrated sequence
CCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGC| |TATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCG
Host Sequence
Chromosome
chr14
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
38351463/37882258 (Hg38)
End
38351463/37882258 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/929867; hsa-mir-1185-1/Downstream/9878737;
Nearest TSS
ENST00000550708/Upstream/54957; ENST00000553887/Downstream/19866;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/259287, chr14-CpG: 43/Downstream/325691
Nearby gene
FOXA1(-287138) ; SSTR1(+325741) ;
Nearest cancer related gene
FOXA1(TSG, -287138) ;
Upstream sequence
gttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttaacattaggtatatctcctaatgctatccctcccccccccccca
Downstream sequence
ccccacaacaggccccagactgtgatgttccccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaacatgtggtgtttggttt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate