Basic Information
VIS ID
TVIS10008624
Fusion event
HBV-LOC110806263 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
564
Orient
+
Integrated sequence
GTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCC| |TGTTGCTGTACCAAACCTTCGGACGGAAATTGCACCTGTATTCCCATCCCATCATCCTGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTT
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
1296970/1296855 (Hg38)
End
1296970/1296855 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC110806263
Nearest miRNA
hsa-mir-4635/Upstream/233881; hsa-mir-10397/Downstream/12455;
Nearest TSS
ENST00000502646/Upstream/1786; ENST00000605200/Downstream/24974;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1000, chr5-CpG: 18/Downstream/38107
Nearby gene
TERT(-1808) ; MIR4457(+12455) ;
Upstream sequence
ATTAATAAAGTCAACAGTAAGTAATGGATCGTATGAAGGAAATTGATATTTCCGTAAGATACAGACTTTCCTTGCCAGAATCCCAACACAACTCTCAATT
Downstream sequence
gggcatggtggctcacacctgtaatcccagcactttaggaggcagaggcaggtggatcatctgaggtcagaagttcgagaccagcctggccaacatggtg
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate