VISDB Viral Integration Site DataBase

VIS ID

TVIS10008669

Fusion event

HBV-KCNT2 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

precore/core protein|Core and e antigen|

Start

2049

Orient

+

Integrated sequence

CTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTCA| |CCTCACCATACTGCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCCAGCGTCTAGAG

Chromosome

chr1

Cytoband

q31.3

Reference genome

Start

End

196564475/196595345 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-335-3p ; hsa-mir-1305 ; hsa-mir-4452 ; hsa-mir-183-3p ; hsa-mir-4775 ; hsa-mir-500a-5p

Nearest miRNA

hsa-mir-101-1/Upstream/12864; hsa-mir-1182/Downstream/2263528;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/3473251, chr1-CpG: 24/Downstream/13233

Upstream sequence

ttgatattaatgaattaattgatattaatgaattaatgatattaattcactataattgaaataattaTAGTGATAATAATGGTGATAGACAAATTAAAAA

Downstream sequence

GCTGTGCACTAGCTTGAGGTTATTCATATGATATGAATTACTTAGCAACCAGAAGTTGGCTACAATAGTCATGTGCTTTATATATATCTCTATCTATGTG