VISDB Viral Integration Site DataBase

VIS ID

TVIS10008678

Fusion event

HBV-SLC35F3 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|precore/core protein|

Start

1827

Orient

-

Integrated sequence

AAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTT| |CACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAAT

Chromosome

chr1

Cytoband

q42.2

Reference genome

Start

End

234193929/234058183 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-215-5p ; hsa-mir-192-5p

Nearest miRNA

hsa-mir-101-1/Upstream/433964; hsa-mir-1537/Downstream/248284;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/152472, chr1-CpG: 63/Downstream/155955

Upstream sequence

tacatacccttatcagggtgataaagttcacttctagccttaggtttgttgagcgctttaatatgaaagagtgtcacatattgtcaattttttttggttt

Downstream sequence

gctttgggtttttttttcgaggatttttgctttatatttcattcacaataccaatttatgaatgttaaaccaaccttgtattcctataataagtctcagt