Basic Information
VIS ID
TVIS10008742
Fusion event
HBV-chr11 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|
Start
1841
Orient
+
Integrated sequence
TTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAAT| |CATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTG
Host Sequence
Chromosome
chr11
Cytoband
q21
Reference genome
GRCh37/hg19
Start
95001517/95268353 (Hg38)
End
95001517/95268353 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10392/Upstream/801773; hsa-let-7a-2/Downstream/1073085;
Nearest TSS
ENST00000527297/Upstream/35782; ENST00000511947/Downstream/214053;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/35929, chr11-CpG: 130/Downstream/520943
Nearby gene
SESN3(-37271) ; FAM76B(+500589) ;
Upstream sequence
gcacaccaccacctcccaccctctttctctctttctctctgtctcctgctcttgctttcaccatgtgatgcacttgctcccaacttcaccttccactgtg
Downstream sequence
attgaaagttccctgagccttcaccagacacttagcagatgacagcacaatgctttcagtaaagcctgcagaactgtgagccaattaaacttcttttctt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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