Basic Information
VIS ID
TVIS10008785
Fusion event
HBV-chr15 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
2501
Orient
+
Integrated sequence
GGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATTCCTTGGACTCATAAGGTGGGGAACTTTACTGGGCTTTATTCTT| |CTACTGTACCTGTCTTTAATCCTCATTGGAAAACACCATCTTTTCCTAATATACATTTACACCAAGACATTATCAAAAAATGTGAACAGTTTGTAGGCCC
Host Sequence
Chromosome
chr15
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
81287689/80995348 (Hg38)
End
81287689/80995348 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/153275; hsa-mir-11181/Downstream/2069;
Nearest TSS
ENST00000557528/Upstream/2090; ENST00000267984/Downstream/4633;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/5272, chr15-CpG: 300/Downstream/5104
Nearby gene
MESD(-5484) ; MIR4514(+2069) ;
Upstream sequence
CTTCAATCTTAAGAGTTGTGAGCTGTTAGGTCATGACCAGACCTAGACTGTACCCCTGCTGTTGTTTCATGAATATCCATGACTTTCTGTCCGTTACTGA
Downstream sequence
ATAAAAGTTGTGAGCAGCCAGAGTTTGGTTCAATAAAAGGGCACCTTTCTTGCACAGAGACTTAACAGATAAAATAATTCATTAACTTATTAATGCCATA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate