Basic Information
VIS ID
TVIS10008788
Fusion event
HBV-chr15 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
1271
Orient
+
Integrated sequence
TCTGTGCCAAGTGTTTGCTGACGCAACCCCCACTGGCTGGGGCTTGGTCATGGGCCATCAGCGCATGCGTGGAACCTTTTCGGCTCCTCTGCCGATCCAT| |ACTGCGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATCGT
Host Sequence
Chromosome
chr15
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
86519751/85976520 (Hg38)
End
86519751/85976520 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/150790; hsa-mir-11181/Downstream/1969686;
Nearest TSS
ENST00000557528/Upstream/181490; ENST00000568785/Downstream/103453;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/135636, chr15-CpG: 36/Downstream/2278903
Nearby gene
KLHL25(-181562) ; AGBL1(+165491) ;
Upstream sequence
AGTAGGTACCCTATTAATAAGTGAATGATGGCTTTGAGGAAATTTTCAGGGTGATTCTGACTCTGAAATGGGATGCTGCCTTATTATGCCTATTTTACTA
Downstream sequence
TAAAGTGAATAATGTAGCATATCTGATATTCACCAATCTTTTACCCCTGAGAAAGATGTGGTTGCACTCAACATAAGAGAGAGCTGAGGCCAAAAGCAGG
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate